This post is going to be longer and a little more technical than normal; feel free to jump in and out, or just check out some of the photos on your way to the conclusions. Although I may come across as critical and occasionally cynical at times, I’m not picking on anyone just to be a thorn, but rather to promote scientific discussion; I fully encourage you to join the discussion in the comments section. Finally, in the spirit of full disclosure, a portion of my graduate research was funded via the NSF Tree of Life grant behind this paper (although neither myself nor my research contributed to this project in any manner that I’m aware of), and one of my academic advisors is a co-author on the paper.
Despite my best efforts here at Biodiversity in Focus, research on flies very rarely makes the mainstream media (besides mosquitoes, malaria and Drosophila of course), so when one of the most important papers on fly evolution was released and started making the science blog circuit, I was excited to see people taking an interest in Dipterology! There was one problem however, which is not limited to the blogosphere and this paper, but has been an increasingly common trend in insect systematics: the blind acceptance and assumption that a new phylogeny is the definitive answer because the researchers used an ever increasing number of genes. One influential blogger, who’s also an evolutionary entomologist, summarized the results of the Diptera tree of life as such:
But they’re solid results, since they’re based on lots of molecular data and the branch positions are well supported. — Jerry A. Coyne, Ph.D
Similarly, the research team who published the tree are encouraging the idea that their results are infallible by labeling their work the “New Periodic Table of Flies”. A bold statement, and one that many taxonomists might be hesitant to make as it implies that they don’t expect future studies to return different relationships, much as the periodic table of chemical elements is not about to change. An analogy like this requires a strong body of evidence to support it, so let’s take a look at what they did and how the Diptera family tree looks!